{ "_id": "6a265f69794753ddbc3e520b", "Package": "phenesse", "Title": "Estimate Phenological Metrics using Presence-Only Data", "Version": "0.1.3", "Authors@R": "c(person(\"Michael\", \"Belitz\", email = \"michaelbelitz06@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8162-5998\")),\nperson(\"Caitlin\", \"Campbell\", email = \"caitjcampbell@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8199-7775\")),\nperson(\"Daijiang\", \"Li\", email = \"daijianglee@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0925-3421\")))", "Description": "Generates Weibull-parameterized estimates of phenology for\nany percentile of a distribution using the framework\nestablished in Cooke (1979) .\nExtensive testing against other estimators suggest the\nweib_percentile() function is especially useful in generating\nmore accurate and less biased estimates of onset and offset\n(Belitz et al. 2020) .\nNon-parametric bootstrapping can be used to generate confidence\nintervals around those estimates, although this is\ncomputationally expensive. Additionally, this package offers an\neasy way to perform non-parametric bootstrapping to generate\nconfidence intervals for quantile estimates, mean estimates, or\nany statistical function of interest.", "VignetteBuilder": "knitr", "License": "CC0", "URL": "https://github.com/mbelitz/phenesse", "BugReports": "https://github.com/mbelitz/phenesse/issues", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.0", "Repository": "https://mbelitz.r-universe.dev", "Date/Publication": "2025-06-11 15:27:43 UTC", "RemoteUrl": "https://github.com/mbelitz/phenesse", "RemoteRef": "HEAD", "RemoteSha": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-07 07:19:57 UTC", "User": "root" }, "Author": "Michael Belitz [aut, cre] (ORCID:\n),\nCaitlin Campbell [ctb] (ORCID: ),\nDaijiang Li [ctb] (ORCID: )", "Maintainer": "Michael Belitz ", "MD5sum": "59ef281d90de5851a93561000b112be2", "_user": "mbelitz", "_type": "src", "_file": "phenesse_0.1.3.tar.gz", "_fileid": "ebf629a96b9c16b528c2064f2aea099ca30dddc91fdae2abb59f66a9c9eb48ed", "_filesize": 130424, "_sha256": "ebf629a96b9c16b528c2064f2aea099ca30dddc91fdae2abb59f66a9c9eb48ed", "_created": "2026-06-07T07:19:57.000Z", "_published": "2026-06-08T06:21:29.268Z", "_distro": "noble", "_jobs": [ { "job": 80033743795, "time": 175, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7461843330" }, { "job": 80033743484, "time": 131, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461837687" }, { "job": 80033743763, "time": 153, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7461857089" }, { "job": 80033743757, "time": 128, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461865050" }, { "job": 80033743083, "time": 235, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7461820654" }, { "job": 80033743762, "time": 99, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7461833806" }, { "job": 80033743751, "time": 95, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7461833616" }, { "job": 80033743660, "time": 79, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7461831154" }, { "job": 80033743270, "time": 82, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7472907890" } ], "_buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mbelitz/phenesse", "_commit": { "id": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "author": "Michael Belitz <41800897+mbelitz@users.noreply.github.com>", "committer": "GitHub ", "message": "Update README.md\n\nupdated zenodo dois", "time": 1749655663 }, "_maintainer": { "name": "Michael Belitz", "email": "michaelbelitz06@gmail.com", "login": "mbelitz", "bluesky": "@mikesmothmodels.bsky.social", "description": "Ecological modeler; Global change biologist; Biodiversity informatician", "uuid": 41800897, "orcid": "0000-0002-8162-5998" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "boot", "role": "Imports" }, { "package": "fitdistrplus", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "mbelitz", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-24", "n": 10 } ], "_tags": [ { "name": "v0.1.3", "date": "2025-06-11" } ], "_stars": 6, "_contributors": [ { "user": "mbelitz", "count": 151, "uuid": 41800897 }, { "user": "cjcampbell", "count": 21, "uuid": 11843815 } ], "_userbio": { "uuid": 41800897, "type": "user", "name": "Michael Belitz", "description": "Ecological modeler; Global change biologist; Biodiversity informatician" }, "_downloads": { "count": 142, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phenesse" }, "_devurl": "https://github.com/mbelitz/phenesse", "_searchresults": 29, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/phenesse.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/mbelitz/phenesse", "_realowner": "mbelitz", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2019-12-22" }, { "version": "0.1.1", "date": "2020-03-28" }, { "version": "0.1.2", "date": "2020-07-29" }, { "version": "0.1.3", "date": "2025-06-10" } ], "_exports": [ "estimate_ci", "mean_ci", "quantile_ci", "weib_percentile", "weib_percentile_ci" ], "_datasets": [ { "name": "inat_examples", "title": "Example iNaturalist-sourced data", "object": "inat_examples", "class": [ "data.frame" ], "fields": [ "scientific_name", "latitude", "longitude", "common_name", "observed_on", "doy" ], "rows": 252, "table": true, "tojson": true } ], "_help": [ { "page": "estimate_ci", "title": "Calculate confidence intervals using bootstrap of any statistical function of interest.", "topics": [ "estimate_ci" ] }, { "page": "inat_examples", "title": "Example iNaturalist-sourced data", "topics": [ "inat_examples" ] }, { "page": "mean_ci", "title": "Calculating the confidence intervals (CIs) of an arithmetic mean.", "topics": [ "mean_ci" ] }, { "page": "quantile_ci", "title": "Calculating the confidence intervals (CIs) of a quantile estimate of a a vector of observations using non-parametric bootstrapping.", "topics": [ "quantile_ci" ] }, { "page": "weib_percentile", "title": "Calculating a percentile estimate of a seasonal abundance distribution from incidental observations.", "topics": [ "weib_percentile" ] }, { "page": "weib_percentile_ci", "title": "Calculating the CIs of a percentile estimate of a seasonal abundance distribution using the non-parametric bootstrapping.", "topics": [ "weib_percentile_ci" ] } ], "_readme": "https://github.com/mbelitz/phenesse/raw/HEAD/README.md", "_rundeps": [ "boot", "fitdistrplus", "lattice", "MASS", "Matrix", "rlang", "survival" ], "_vignettes": [ { "source": "phenesse_vignette.Rmd", "filename": "phenesse_vignette.html", "title": "phenesse vignette", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Loading example data", "The main function of 'phenesse': weib_percentile", "weib_percentile calculates a Weibull-parameterized estimate of phenology for any percentile of a distribution", "Use non-parametric bootstrapping to calculate confidence interval of estimate", "CAUTION: Calculating confidence interval of Weibull-corrected estimates are computationally expensive. Consider options to parallelize calculations", "Options to parallelize weib_percentile_ci", "CIs for mean and quantile estimates", "Another functionality of phenesse, is it provides functions to calculate confidence intervals of quantile and mean estimates using non-parametric bootstrapping" ], "created": "2019-11-07 18:50:25", "modified": "2020-07-28 14:50:10", "commits": 8 } ], "_score": 4.939519252618618, "_indexed": true, "_nocasepkg": "phenesse", "_universes": [ "mbelitz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-06-07T07:22:50.000Z", "distro": "noble", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "5d27798e7da2ea1d76bba7dcdcada13f93c8c80e99b37a577467e7145b82897f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.6.0", "os": "linux", "version": "0.1.3", "date": "2026-06-07T07:22:06.000Z", "distro": "noble", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "cfed4f873b9c4e221dbaea10853a58126f7c40db7e9b9a98ee3534e8c9672cd8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-06-07T07:24:49.000Z", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "fe79a52d862c54a86b1bcdc70c4cd6776a9efb57057caae1449d0e373a18c147", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.6.0", "os": "mac", "version": "0.1.3", "date": "2026-06-07T07:25:48.000Z", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "11bd86a6cf70bd4c08e5fde718d31c99c2a2771f779bd13288d0e210a1ac63de", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-06-07T07:22:03.000Z", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "e603fc440c771d1445ebd5a5629eec154ce734a0cdbc614d59f1a1bc03afa51b", "status": "success", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-06-07T07:21:23.000Z", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "eb18172dfe1d2015da47ef00fef09aca141c1fc046b6bf6de51005082e22a98e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-06-07T07:21:11.000Z", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "a44ec9ee913f456faa2c6035b2e63860d59f050058278c1b953b1bacb9a75ef4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" }, { "r": "4.6.0", "os": "win", "version": "0.1.3", "date": "2026-06-08T06:20:42.000Z", "commit": "ad8c67d0a4f3a613a8e9ca77f411e763c7d9fc30", "fileid": "0e98a7527c6548fd07214f80b119066d7cbb481c60e5bf0bd469e99f168909d2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mbelitz/actions/runs/27085881951" } ] }